Codon usage bias analysis of 22 Anemone
DOI:
https://doi.org/10.54097/04rwse67Keywords:
Anemone, rbcL, Codon usage bias, cluster analysis, RSCU.Abstract
Codon preference analysis for the rbcL gene of Ranunculaceae plants remains to be completed, and for this purpose we selected 10801 codons from 23 Ranunculaceae Juss. plants for analysis. Among them, 30 codons had relative synonymous codon usage values greater than or equal to 1. The codon endings were preferred to A and U, among which U was more preferred. Neutrality plot analysis, ENC-GC3s plot analysis and PR2 bias plot analysis showed that codon preference in Anemone L. was mainly influenced by selection pressure. Cluster analysis showed that a phylogenetic tree could be constructed for Anemone L. based on relative synonymous codon usage values. Comparison with codon usage frequencies in model organisms indicated that Arabidopsis thaliana and Saccharomyces cerevisiae are more suitable vectors for exogenous expression of the rbcL gene in Anemone L. plants. These results help to elucidate the molecular biological characteristics of Ranunculaceae Juss. plants for further exploitation of Ranunculaceae Juss. plant resources in areas such as synthetic biology.
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