CRIPSRi: a promising RNA-guided CRISPR-dCas Technology for Alzheimer’s Disease and Glioma Therapy

Authors

  • Yuhan Lu

DOI:

https://doi.org/10.54097/7x9epm29

Keywords:

CRISPR interference, Deactivated Cas protein, Alzheimer’s Disease, Glioma, Gene therapy, Epigenome editing, DNA methylation, Neuroepigenetic

Abstract

The escalating prevalence and mortality rates of neurological disorders, such as Alzheimer's disease (AD) and glioma, pose significant healthcare challenges. The exploration of novel therapeutic modalities is in urgent need. Among these, CRISPR interference (CRISPRi) leveraging RNA-guided deactivated Cas proteins for the regulation of gene expression stands out for its potential in neuroepigenetic interventions. This paradigm shift from the canonical CRISPR-Cas9 system, which operates via the introduction of double-strand breaks, to CRISPRi's non-cleaving approach mitigates the risk of off-target mutagenesis, thereby presenting a more refined strategy for modulating gene activity within the intricate milieu of the central nervous system (CNS). This review highlights the shift from CRISPR-Cas9 to CRISPR-dCas technologies, focusing on the application of CRISPR interference in addressing the pathogenesis of AD and glioma. The pathological frameworks is further unpacked by revealing the pivotal roles of genes such as APP, MGMT, and TERT. Through allele-specific epigenome editing, CRISPRi has demonstrated considerable efficacy in the preclinical modulation of gene expression via targeted DNA methylation, consequently degrading the pathological manifestations. Notably, evidence suggests CRISPRi's capacity to effectuate significant downregulation of hotspot genes like APP and MGMT expression and to modulate TERT activity. Despite promising results, challenges such as off-target effects, delivery barriers, particularly across the blood-brain barrier (BBB), and potential immunogenic responses limit clinical translation. Advances in sgRNA design, novel delivery systems, and epigenetic editing tools are discussed as strategies to overcome these hurdles. Thus, CRISPRi can be positioned as one of the most promising instruments in genomic medicine, with the potential to reshape the therapeutic strategies of AD and glioma.

Downloads

Download data is not yet available.

References

Feigin, V. L., Vos, T., Nichols, E., Owolabi, M. O., Carroll, W. M., Dichgans, M., Deuschl, G., Parmar, P., Brainin, M., & Murray, C. The global burden of neurological disorders: translating evidence into policy. The Lancet. Neurology, 2020, 19(3): 255–265.

Gooch, C. L., Pracht, E., & Borenstein, A. R. The burden of neurological disease in the United States: A summary report and call to action. Annals of Neurology, 2017, 81(4): 479–484.

Soria Lopez, J. A., González, H. M., & Léger, G. C. Alzheimer's disease. Handbook of Clinical Neurology, 2019, 167: 231–255.

Klein, H. U., & De Jager, P. L. Uncovering the Role of the Methylome in Dementia and Neurodegeneration. Trends in Molecular Medicine, 2016, 22(8): 687–700.

Ricci, R., & Colasante, G. CRISPR/dCas9 as a Therapeutic Approach for Neurodevelopmental Disorders: Innovations and Limitations Compared to Traditional Strategies. Developmental Neuroscience, 2021, 43(3-4): 253–261.

U.S. Census Bureau. Population estimates, detailed. Retrieved from https://www.census.gov/newsroom/press-kits/2020/population-estimates-detailed.html, 2020.

McNeill K. A. Epidemiology of Brain Tumors. Neurologic Clinics, 2016, 34(4): 981–998.

Gusyatiner, O., & Hegi, M. E. Glioma epigenetics: From subclassification to novel treatment options. Seminars in Cancer Biology, 2018, 51: 50–58.

Molinaro, A. M., Taylor, J. W., Wiencke, J. K., & Wrensch, M. R. Genetic and molecular epidemiology of adult diffuse glioma. Nature Reviews. Neurology, 2019, 15(7): 405–417.

Xu, S., Tang, L., Li, X., Fan, F., & Liu, Z. Immunotherapy for glioma: Current management and future application. Cancer Letters, 2020, 476: 1–12

Wang, J., Yang, J., Li, D., & Li, J. Technologies for targeting DNA methylation modifications: Basic mechanism and potential application in cancer. Biochimica et Biophysica Acta. Reviews on Cancer, 2021, 1875(1): 188454.

Borodovsky, A., Salmasi, V., Turcan, S., Fabius, A. W., Baia, G. S., Eberhart, C. G., Weingart, J. D., Gallia, G. L., Baylin, S. B., Chan, T. A., & Riggins, G. J. 5-azacytidine reduces methylation, promotes differentiation and induces tumor regression in a patient-derived IDH1 mutant glioma xenograft. Oncotarget, 2013, 4(10): 1737–1747.

Anthony K. RNA-based therapeutics for neurological diseases. RNA Biology, 2022, 19(1): 176–190.

Chen, W., Hu, Y., & Ju, D. Gene therapy for neurodegenerative disorders: advances, insights and prospects. Acta Pharmaceutica Sinica. B, 2020, 10(8): 1347–1359.

Cai, R., Lv, R., Shi, X., Yang, G., & Jin, J. CRISPR/dCas9 Tools: Epigenetic Mechanism and Application in Gene Transcriptional Regulation. International Journal of Molecular Sciences, 2023, 24(19): 14865.

Luther, D. C., Lee, Y. W., Nagaraj, H., Scaletti, F., & Rotello, V. M. Delivery approaches for CRISPR/Cas9 therapeutics in vivo: advances and challenges. Expert Opinion on Drug Delivery, 2018, 15(9): 905–913.

Rahman, M. M., & Tollefsbol, T. O. Targeting cancer epigenetics with CRISPR-dCAS9: Principles and prospects. Methods (San Diego, Calif.), 2021, 187: 77–91.

Della Monica, R., Cuomo, M., Buonaiuto, M., Costabile, D., Franca, R. A., Del Basso De Caro, M., Catapano, G., Chiariotti, L., & Visconti, R. MGMT and Whole-Genome DNA Methylation Impacts on Diagnosis, Prognosis and Therapy of Glioblastoma Multiforme. International Journal of Molecular Sciences, 2022, 23(13): 7148.

Rittiner, J., Cumaran, M., Malhotra, S., & Kantor, B. Therapeutic modulation of gene expression in the disease state: Treatment strategies and approaches for the development of next-generation of the epigenetic drugs. Frontiers in Bioengineering and Biotechnology, 2022, 10: 1035543.

Xu, X., & Qi, L. S. A CRISPR-dCas Toolbox for Genetic Engineering and Synthetic Biology. Journal of Molecular Biology, 2019, 431(1): 34–47.

Zawia, N. H., Lahiri, D. K., & Cardozo-Pelaez, F. Epigenetics, oxidative stress, and Alzheimer disease. Free Radical Biology & Medicine, 2009, 46(9): 1241–1249.

Mastroeni, D., Grover, A., Delvaux, E., Whiteside, C., Coleman, P. D., & Rogers, J. Epigenetic mechanisms in Alzheimer's disease. Neurobiology of Aging, 2011, 32(7): 1161-1180.

Maity, S., Farrell, K., Navabpour, S., Narayanan, S. N., & Jarome, T. J. Epigenetic Mechanisms in Memory and Cognitive Decline Associated with Aging and Alzheimer's Disease. International Journal of Molecular Sciences, 2021, 22(22): 12280.

Feng, J., Zhou, Y., Campbell, S. L., Le, T., Li, E., Sweatt, J. D., Silva, A. J., & Fan, G. Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons. Nature Neuroscience, 2010, 13(4): 423–430.

Liao, J., Karnik, R., Gu, H., Ziller, M. J., Clement, K., Tsankov, A. M., Akopian, V., Gifford, C. A., Donaghey, J., Galonska, C., Pop, R., Reyon, D., Tsai, S. Q., Mallard, W., Joung, J. K., Rinn, J. L., Gnirke, A., & Meissner, A. Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells. Nature Genetics, 2015, 47(5): 469–478.

Qi, L. S., Larson, M. H., Gilbert, L. A., Doudna, J. A., Weissman, J. S., Arkin, A. P., & Lim, W. A. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 2013, 152(5): 1173–1183.

Bendixen, L., Jensen, T. I., & Bak, R. O. CRISPR-Cas-mediated transcriptional modulation: The therapeutic promises of CRISPRa and CRISPRi. Molecular Therapy: The Journal of the American Society of Gene Therapy, 2023, 31(7): 1920–1937.

Ansari, I., Chaturvedi, A., Chitkara, D., & Singh, S. CRISPR/Cas mediated epigenome editing for cancer therapy. Seminars in Cancer Biology, 2022, 83: 570–583.

Lundh, M., Pluciñska, K., Isidor, M. S., Petersen, P. S. S., & Emanuelli, B. Bidirectional manipulation of gene expression in adipocytes using CRISPRa and siRNA. Molecular Metabolism, 2017, 6(10): 1313–1320.

Vojta, A., Dobrinić, P., Tadić, V., Bočkor, L., Korać, P., Julg, B., Klasić, M., & Zoldoš, V. Repurposing the CRISPR-Cas9 system for targeted DNA methylation. Nucleic Acids Research, 2016, 44(12): 5615–5628.

Lo, A., & Qi, L. Genetic and epigenetic control of gene expression by CRISPR-Cas systems. F1000Research, 2017, 6: F1000 Faculty Rev-747.

Chakravarti, R., Lenka, S. K., Gautam, A., Singh, R., Ravichandiran, V., Roy, S., & Ghosh, D. A Review on CRISPR-mediated Epigenome Editing: A Future Directive for Therapeutic Management of Cancer. Current Drug Targets, 2022, 23(8): 836–853.

Kampmann M. CRISPRi and CRISPRa Screens in Mammalian Cells for Precision Biology and Medicine. ACS Chemical Biology, 2018, 13(2): 406–416.

Stepper, P., Kungulovski, G., Jurkowska, R. Z., Chandra, T., Krueger, F., Reinhardt, R., Reik, W., Jeltsch, A., & Jurkowski, T. P. Efficient targeted DNA methylation with chimeric dCas9-Dnmt3a-Dnmt3L methyltransferase. Nucleic Acids Research, 2017, 45(4): 1703–1713.

Herms, J., Anliker, B., Heber, S., Ring, S., Fuhrmann, M., Kretzschmar, H., Sisodia, S., & Müller, U. Cortical dysplasia resembling human type 2 lissencephaly in mice lacking all three APP family members. The EMBO Journal, 2004, 23(20): 4106–4115.

Nikolac Perkovic, M., Videtic Paska, A., Konjevod, M., Kouter, K., Svob Strac, D., Nedic Erjavec, G., & Pivac, N. Epigenetics of Alzheimer's Disease. Biomolecules, 2021, 11(2): 195.

Park, H., Shin, J., Kim, Y., Saito, T., Saido, T. C., & Kim, J. CRISPR/dCas9-Dnmt3a-mediated targeted DNA methylation of APP rescues brain pathology in a mouse model of Alzheimer's disease. Translational Neurodegeneration, 2022, 11(1): 41.

Zapanta Rinonos, S., Li, T., Pianka, S. T., Prins, T. J., Eldred, B. S. C., Kevan, B. M., Liau, L. M., Nghiemphu, P. L., Cloughesy, T. F., & Lai, A. dCas9/CRISPR-based methylation of O-6-methylguanine-DNA methyltransferase enhances chemosensitivity to temozolomide in malignant glioma. Journal of Neuro-Oncology, 2024, 166(1): 129–142.

Han, X., Abdallah, M. O. E., Breuer, P., Stahl, F., Bakhit, Y., Potthoff, A. L., Pregler, B. E. F., Schneider, M., Waha, A., Wüllner, U., & Evert, B. O. Downregulation of MGMT expression by targeted editing of DNA methylation enhances temozolomide sensitivity in glioblastoma. Neoplasia (New York, N.Y.), 2023, 44: 100929.

Lee, D. D., Leão, R., Komosa, M., Gallo, M., Zhang, C. H., Lipman, T., Remke, M., Heidari, A., Nunes, N. M., Apolónio, J. D., Price, A. J., De Mello, R. A., Dias, J. S., Huntsman, D., Hermanns, T., Wild, P. J., Vanner, R., Zadeh, G., Karamchandani, J., Das, S., … Tabori, U. DNA hypermethylation within TERT promoter upregulates TERT expression in cancer. The Journal of Clinical Investigation, 2019, 129(1): 223–22

Taghavi Rad, F., Ghorbian, S., Naghavi Gargari, B., Shirvani Farsani, Z., & Sharifi, R. hTERT Gene Modification Using CRISPR-dCas9-dnmt3a System as a Therapeutic Approach Against Glioma. Iranian Journal of Pharmaceutical Research: IJPR, 2023, 22(1): e137226.

Kouroukli, A. G., Rajaram, N., Bashtrykov, P., Kretzmer, H., Siebert, R., Jeltsch, A., & Bens, S. Targeting oncogenic TERT promoter variants by allele-specific epigenome editing. Clinical Epigenetics, 2023, 15(1): 183.

Charlesworth, C. T., Deshpande, P. S., Dever, D. P., Camarena, J., Lemgart, V. T., Cromer, M. K., Vakulskas, C. A., Collingwood, M. A., Zhang, L., Bode, N. M., Behlke, M. A., Dejene, B., Cieniewicz, B., Romano, R., Lesch, B. J., Gomez-Ospina, N., Mantri, S., Pavel-Dinu, M., Weinberg, K. I., & Porteus, M. H. Identification of preexisting adaptive immunity to Cas9 proteins in humans. Nature Medicine, 2019, 25(2): 249–254.

Downloads

Published

11-07-2024

How to Cite

Lu, Y. (2024). CRIPSRi: a promising RNA-guided CRISPR-dCas Technology for Alzheimer’s Disease and Glioma Therapy. Highlights in Science, Engineering and Technology, 102, 451-460. https://doi.org/10.54097/7x9epm29