Enhancing Retinal Vessel Segmentation with a Simplified nnU-Net Model and CBAM
DOI:
https://doi.org/10.54097/50tqkg08Keywords:
Retinal Vessel Segmentation, nnU-Net, Convolutional Block Attention Module, Deep Learning.Abstract
To better diagnose and monitor ocular diseases, segmentation of blood vessels on the retina is crucial, but manual annotation is labor-intensive and error-prone. To deal with these problems, many automatic segmentation algorithms have already been developed, with deep learning techniques, leading the advancements. This study aims to enhance retinal vessel segmentation by refining the no-new-U-Net (nnU-Net) model through two key modifications: the integration of the Convolutional Block Attention Module (CBAM) attention blocks and the replacement of the original Stage 1 nnU-Net with a simplified Residual Neural Network (ResNet)-like network. The incorporation of CBAM improves feature extraction by focusing on the most relevant features, while the ResNet-like architecture simplifies the network structure, making it more efficient. Experimental results on the Retina Blood Vessel Dataset reveal that the modified nnU-Net model significantly outperforms the original in terms of both Dice score and prediction time. Specifically, it achieves superior accuracy in identifying fine blood vessels and demonstrates reduced memory usage, showcasing its potential for delivering more precise and efficient retinal vessel segmentation.
Downloads
References
[1] Conor H. John F. Michael O. Mark C. Characterization of changes in blood vessel width and tortuosity in retinopathy of prematurity using image analysis. Medical Image Analysis, 2002, 6 (4): 407-429. DOI: https://doi.org/10.1016/S1361-8415(02)00058-0
[2] Chaudhuri S. Chatterjee S. Katz N. et al. Detection of blood vessels in retinal images using two-dimensional matched filters. IEEE Transactions on medical imaging, 1989, 8 (3): 263-269. DOI: https://doi.org/10.1109/42.34715
[3] Mendonca A.M. Campilho A. Segmentation of retinal blood vessels by combining the detection of centerlines and morphological reconstruction. IEEE transactions on medical imaging, 2006, 25 (9): 1200-1213. DOI: https://doi.org/10.1109/TMI.2006.879955
[4] Kass M. Witkin A. Terzopoulos D. Snakes: Active contour models. International journal of computer vision, 1988, 1 (4): 321-331. DOI: https://doi.org/10.1007/BF00133570
[5] Ronneberger O. Fischer P. & Brox T. U-Net: Convolutional networks for biomedical image segmentation. International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2015, 234-241. DOI: https://doi.org/10.1007/978-3-319-24574-4_28
[6] Diakogiannis F.I. Waldner F. Caccetta P. et al. ResUNet-a: A deep learning framework for semantic segmentation of remotely sensed data. ISPRS Journal of Photogrammetry and Remote Sensing, 2020, 162: 94-114. DOI: https://doi.org/10.1016/j.isprsjprs.2020.01.013
[7] Oktay O. Schlemper J. Folgoc L.L. et al. Attention u-net: Learning where to look for the pancreas. 2018, arXiv preprint arXiv: 1804.03999.
[8] Liskowski P. Krawiec K. Segmenting retinal blood vessels with deep neural networks. IEEE transactions on medical imaging, 2016, 35 (11): 2369-2380. DOI: https://doi.org/10.1109/TMI.2016.2546227
[9] Isensee F. Petersen J. Klein A. et al. nnu-net: Self-adapting framework for u-net-based medical image segmentation. 2018, arXiv preprint: 1809.10486.
[10] Woo S. Park J. Lee J.Y. et al. Cbam: Convolutional block attention module. Proceedings of the European conference on computer vision (ECCV). 2018: 3-19. DOI: https://doi.org/10.1007/978-3-030-01234-2_1
[11] Kaggle dataset, “Retina Blood Vessel”, 2023, https://www.kaggle.com/datasets/abdallahwagih/retina-blood-vessel.
[12] He K. Zhang X. Ren S. et al. Deep residual learning for image recognition. Proceedings of the IEEE conference on computer vision and pattern recognition. 2016: 770-778. DOI: https://doi.org/10.1109/CVPR.2016.90
Downloads
Published
Issue
Section
License
Copyright (c) 2024 Highlights in Science, Engineering and Technology

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.







